User Guide

ThaiSNP2 Database aims to determine Single Nucleotide Polymorphisms (SNPs) and Copy Number Variations (CNVs) in Thai population by using 5th generation Affymetrix SNP genotyping array, each array contains approximately 500,000 known SNP genotyping positions. We genotype the 32 Thai DNA samples from ThaiSNP1 project. Furthermore, this analysis offers genetic comparative analysis of Thais against other population from public database (NCBI, HapMap and JSNP) and Pan Asian population. The genotypic information will be made available for public access through web/database host at BIOTEC. The primary data, e.g., allele, frequency, genomic locations will be first catalogued in this database.

ThaiSNP2 Database incorporates human variations from various public databases :

ThaiSNP2 Database provides the four main features that include :

  1. Search SNPs information from gene, chromosome position, associated disease and SNP ID.
  2. Search CNVRs information within chromosome.
  3. Export genotyped data and LD Blocks from ThaiSNP2 project.
  4. Graphical visualization with GBrowse

To download the genotype data, user must logged in to the website. To register for new user, you can complete the form at Genome Institute Registration Form for Web Application Access.