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Since Jan 10, 2008

 

Bioinformatic Tools at Genome Institute

Bioinformatic tools and web-applications developed at the Genome Institute, BIOTEC

gelect: Automatic DNA Diagnosis for 1D Gel Electrophoresis Images using Bio-image Processing Technique

link: http://www4a.biotec.or.th/GI/tools/gelect

 


iNJclust framework: a genotypic data clustering software

link: http://www4a.biotec.or.th/GI/tools/injclust

 


METASEL: Free Karyotyping Tool using Gaussian-based Classification Technique

link: http://www4a.biotec.or.th/GI/tools/metasel

 


iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies

link: http://www4a.biotec.or.th/GI/tools/iloci

 


microPIR and microPIR II (microRNA-Promoter Interaction Resource)

journal: PLoS ONE
authors: Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S
year: 2012
link: www4a.biotec.or.th/micropir

journal: Database
authors: Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S
year: 2014
link: www4a.biotec.or.th/micropir2

  micropir-logo1.png

 


Rubber tree genome database

journal: DNA Research
authors: Triwitayakorn K, Chatkulkawin P, Kanjanawattanawong S, Sraphet S, Yoocha T, Sangsrakru D, Chanprasert J, Ngamphiw C, Jomchai N, Therawattanasuk K, Tangphatsornruang S
year: 2011

link: www4a.biotec.or.th/rubber

  rubber-logo.png

 


Oil palm database

link: www4a.biotec.or.th/oilpalmdb

 


MUTANT : MUTation ANnotation Tool .

link: www4a.biotec.or.th/GI/tools/mutant

  mutant.png

 


ipPCA : iterative pruning PCA for population structure study.


journal: BMC Bioinformatics
authors: Intarapanich A, Shaw P J, Assawamakin A, Wangkumhang P, Ngamphiw C, Chaichoompu K, Piriyapongsa J, and Tongsima S
year: 2009
link: http://www4a.biotec.or.th/GI/tools/ippca

i2ppca_logo.png

 

 



journal: BMC Genomics
authors: Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G and Tongsima S
year: 2009
link: http://www4a.biotec.or.th/rexprimer

 

 rexprimer_85px.png



journal: BMC Bioinformatics
authors: Ngamphiw C, Kulawonganunchai S, Assawamakin A, Jenwitheesuk E and Tongsima S
year: 2008


The automate SNP detection software.


journal: BMC Genomics
authors: Wangkumhang P, Chaichoompu K, Ngamphiw C, Ruangrit U, Chanprasert J, Assawamakin A, Tongsima S
year: 2007
link: http://bioinfo.biotec.or.th/wasp

 

 



journal: Human Mutation
authors: Ruangrit U, Srikummool M, Assawamakin A, Ngamphiw C, Chuechote S, Thaiprasarnsup V, Agavatpanitch G, Pasomsab E, Yenchitsomanas P,  Mahasirimongkol S, Chantratita W, Palittapongarnpim P, Uyyanonvara B, Limwongse C,  and Tongsima S
year: 2008
link: http://www4a.biotec.or.th/thaimut


thaimut_logo.png



link : http://www.biotec.or.th/thaisnp
thaisnp.png

 



link : http://www4a.biotec.or.th/thaisnp2
thaisnp.png

 


Pan Asian SNP Database


link : http://www.biotec.or.th/PASNP
pasnp.png

 


ClustalW-MTV

Multi-threading and Vectorizing version of ClustalW (The optimized version of MT-ClustalW)


Bioenergy database

link: http://www4a.biotec.or.th/bioenergy

bioenergy-logo.jpg

 

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