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Since Jan 10, 2008

 

Tools

Resources of Genome Institute, BIOTEC

Document Bioinformatic Tools at Genome Institute
Bioinformatic tools and web-applications developed at the Genome Institute, BIOTEC
Document VarDetect
A sequence variation exploration tool
Document ThaiSNP
 
Document WaSP
 
Document RExPrimer
 
Document ThaiMUT
 
Document PASNP
 
Document CoG DB
 
Document ClustalW-MTV
Multi-threading and Vectorizing version of ClustalW (The optimized version of MT-ClustalW)
Image VarDetect comparison results
 
Document ipPCA
 
Folder CoGdB Download
 
File ipPCA Source files
 
Document MUTANT
 
Image adoeair download
 
Image Screen shot 2010-05-25 at 11.34.02 AM.png
 
Document MUTANT Installation Guide
Installation guide to install MUTANT software.
Image air icon
 
Image mutantsetupicon
 
Image adobeair_prompt1
 
Image prompt2.jpg
 
Image adobeair_prompt3
 
Image mutant_desktop icon
 
Image help icon
 
File BinaryAllelicEncoding_Xing.py
Python script use to convert SNPs genotype data from Xing et al dataset (http://jorde-lab.genetics.utah.edu) in to binary allelic data encoding
File BinaryAllelicEncoding_Tishkoff.py
Python script use to convert microsatellite data from Tishkoff et al dataset (http://www.sciencemag.org/content/vol0/issue2009/images/data/1172257/DC1/1172257_dataset.zip) in to binary allelic data encoding (1 for present allele, 0 for absent allele)
File i2pPCA source code
 
File i2pPCA_readme.txt
 
File New_Encode01_185pops.txt.zip
 
File NewEncode01_NspI_JH_Geno.txt.bz2
 
Document AIMs
An Unsupervised Algorithm for Population Classification and Ancestry Informative Marker Selection
File Supplement
 
File 50K EigenDev
 
File 50K Tw
 
File 20K Tw
 
File 20K EigenDev
 
Document iLOCi
 
File iLOCi_Scripts.zip
 
File README.pdf
iLOCi README
Image iLOCi_Flow.png
 
Document Actions